nf-codecommit

This plugin provides integration with AWS CodeCommit, enabling Nextflow to pull pipeline scripts directly from CodeCommit repositories.

Get Started

To use this plugin, add it to your nextflow.config:

plugins {
    id 'nf-codecommit'
}

The plugin enables Nextflow to recognize CodeCommit repository URLs and authenticate using your AWS credentials.

Run a pipeline directly from CodeCommit:

nextflow run codecommit://my-repo/main.nf

Examples

Running a Pipeline from CodeCommit

nextflow run codecommit://my-pipeline-repo/main.nf

Specifying a Branch or Tag

nextflow run codecommit://my-pipeline-repo/main.nf -r develop

Using a Specific AWS Region

nextflow run codecommit://my-pipeline-repo/main.nf -hub codecommit -hub-opts region=eu-west-1

Configuration with AWS Region

plugins {
    id 'nf-codecommit'
}

aws {
    region = 'us-east-1'
}

Using AWS Profiles

Set the AWS profile via environment variable:

export AWS_PROFILE=my-profile
nextflow run codecommit://my-repo/main.nf

Resources

• AWS CodeCommit Documentation
• Nextflow Pipeline Sharing

License

Apache License 2.0