Nextflow Modules
Showing module(s) with keyword "registration"
| Module | Keywords | Description |
|---|---|---|
| nf-core/ashlar | image_processing alignment registration | Alignment by Simultaneous Harmonization of Layer/Adjacency Registration |
| nf-core/mcstaging/phenoimager2mc | imaging registration ome-tif Staging MCMICRO | Staging module for MCMICRO transforming PhenoImager .tif files into stacked and normalized ome-tif files per cycle, compatible as ASHLAR input. |
| nf-core/phenoimager2mc | imaging registration ome-tif Staging MCMICRO | Formatting PhenoImager TIFF output files into stacked and normalized OME-TIFF files per cycle, compatible as ASHLAR and MCMICRO input. |
| nf-core/rami2d/register | registration imaging multiplex spatial | offers 3 pre-defined registration schemes 1) Rigid, 2) Rigid+Affine 3) Rigid+Affine+Bsplines, each of them providing more geometrical adaptability and thus more control in the final outcome. |
| nf-core/rami2d/transform | imaging spatialomics multiplexed registration transform | Applies transformations to images using RAMI2D, designed to take the transformation maps produced by rami2d-register |