Nextflow Modules
Showing module(s) with keyword "read-mode"
| Module | Keywords | Description |
|---|---|---|
| nf-core/oarfish/alignmentprojectionmode | fastq transcript quantification read-mode | oarfish is a program for quantifying transcript-level expression from long-read sequencing technologies. Project an existing spliced genome BAM (e.g. from minimap2 -ax splice) onto the annotated transcripts, then quantify. |
| nf-core/oarfish/readmode | fastq transcript quantification read-mode | oarfish is a program for quantifying transcript-level expression from long-read sequencing technologies. Map raw reads to the transcriptome internally with the built-in rammap mapper, then quantify. |
| nf-core/oarfish/readprojectionmode | fastq transcript quantification read-mode | oarfish is a program for quantifying transcript-level expression from long-read sequencing technologies. Spliced-align raw reads to the genome, project each read's genomic alignments onto the annotated transcripts via bramble, then quantify. |