Nextflow Modules
Showing module(s) with keyword "hifi_trimmer"
| Module | Keywords | Description |
|---|---|---|
| nf-core/hifitrimmer/filterbam | pacbio bam fasta hifi_trimmer filtering trimming quality control adapter removal | Run hifi_trimmer filter_bam to filter and trim adapter hits from PacBio HiFi reads (BAM/FASTA/FASTQ) using BLAST against adapter sequences. Primary output is filtered FASTA/FASTQ. |
| nf-core/hifitrimmer/processblast | pacbio bam hifi_trimmer processblast quality control adapter removal | Run hifi_trimmer process_blast to process a BLAST search of adapter sequences against PacBio HiFi reads. Primary output is a BED describing regions to exclude, a json of summary information, and an optional hits file. |
| nf-core/hifitrimmer/trim | pacbio bam fasta fastq hifi_trimmer filtering trimming quality control adapter removal | Run hifi-trimmer trim to filter and trim adapter-hit regions from PacBio HiFi reads. Supports BAM/CRAM/FASTA/FASTQ input and emits gzip-compressed FASTA (default) or FASTQ, or SAM, BAM, or CRAM according to the selected output format. |