|
nf-core/gcta/addgrms
|
gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
|
Combine multiple GRMs listed in an MGRM manifest into a single dense GRM
|
|
nf-core/gcta/adjustgrm
|
gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
|
Adjust a dense GRM for incomplete tagging using `gcta --grm-adj`
|
|
nf-core/gcta/bivariatereml
|
gcta
genome-wide complex trait analysis
reml
restricted maximum likelihood
bivariate
grm
genetic relationship matrix
genetics
|
Run bivariate REML analysis with a single dense GRM
|
|
nf-core/gcta/bivariateremlldms
|
gcta
genome-wide complex trait analysis
reml
restricted maximum likelihood
bivariate
ldms
linkage disequilibrium and minor allele frequency stratification
grm
genetic relationship matrix
genetics
|
Run bivariate REML-LDMS analysis with an MGRM manifest
|
|
nf-core/gcta/calculateldscores
|
gcta
genome-wide complex trait analysis
ld score
linkage disequilibrium score
ldms
linkage disequilibrium and minor allele frequency stratification
genetics
|
Calculate LD scores with GCTA and derive GREML-LDMS SNP groups
|
|
nf-core/gcta/grmcutoff
|
gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
|
Apply a genetic relationship cutoff to a dense GRM using `gcta --grm-cutoff`
|
|
nf-core/gcta/keep
|
gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
|
Apply a keep file to a dense GRM using `gcta --keep`
|
|
nf-core/gcta/makegrm
|
gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
|
Compute a whole dense GRM with GCTA
|
|
nf-core/gcta/makegrmpart
|
gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
|
Compute one partition of a GCTA genetic relationship matrix
|
|
nf-core/gcta/reml
|
gcta
genome-wide complex trait analysis
reml
restricted maximum likelihood
grm
genetic relationship matrix
genetics
|
Run univariate REML heritability estimation with a dense GRM
|
|
nf-core/gcta/remlldms
|
gcta
genome-wide complex trait analysis
reml
restricted maximum likelihood
ldms
linkage disequilibrium and minor allele frequency stratification
grm
genetic relationship matrix
genetics
|
Run REML-LDMS heritability estimation with an MGRM manifest
|