Nextflow Modules
Showing module(s) with keyword "differential"
| Module | Keywords | Description |
|---|---|---|
| nf-core/anota2seq/anota2seqrun | riboseq rnaseq translation differential | Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq |
| nf-core/deseq2/differential | differential expression rna-seq deseq2 | runs a differential expression analysis with DESeq2 |
| nf-core/dotseq/dotseq | riboseq rnaseq translation differential orf | Detect differential ORF usage (DOU) and ORF-level differential translation efficiency (DTE) from Ribo-seq with matched RNA-seq using DOTSeq. Wraps DOTSeqDataSetsFromSummarizeOverlaps() + DOTSeq() + getContrasts() and emits the package's native contrast tables plus plotDOT() visualisations. |
| nf-core/limma/differential | differential expression microarray limma | runs a differential expression analysis with Limma |
| nf-core/propr/propd | differential proportionality logratio expression propr propd | Perform differential proportionality analysis |
| nf-core/shinyngs/app | differential expression rna-seq deseq2 | build and deploy Shiny apps for interactively mining differential abundance data |
| nf-core/shinyngs/staticdifferential | rnaseq plot differential shinyngs | Make plots for interpretation of differential abundance statistics |